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PDBsum entry 3mzl

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protein Protein-protein interface(s) links
Protein transport PDB id
3mzl

 

 

 

 

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Contents
Protein chains
279 a.a. *
329 a.a. *
* Residue conservation analysis
PDB id:
3mzl
Name: Protein transport
Title: Sec13/sec31 edge element, loop deletion mutant
Structure: Protein transport protein sec13. Chain: a, c, e, g. Engineered: yes. Protein transport protein sec31. Chain: b, d, f, h. Fragment: unp residues 370-746, deletion of residues 474-507. Synonym: protein web1. Engineered: yes
Source: Saccharomyces cerevisiae. Yeast. Organism_taxid: 4932. Gene: anu3, l8167.4, sec13, ylr208w. Expressed in: escherichia coli. Expression_system_taxid: 562. Gene: d1229, sec31, web1, ydl195w.
Resolution:
2.80Å     R-factor:   0.268     R-free:   0.300
Authors: J.R.Whittle,T.U.Schwartz
Key ref: J.R.Whittle and T.U.Schwartz (2010). Structure of the Sec13-Sec16 edge element, a template for assembly of the COPII vesicle coat. J Cell Biol, 190, 347-361. PubMed id: 20696705
Date:
12-May-10     Release date:   18-Aug-10    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q04491  (SEC13_YEAST) -  Protein transport protein SEC13 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Seq:
Struc:
297 a.a.
279 a.a.
Protein chains
Pfam   ArchSchema ?
P38968  (SEC31_YEAST) -  Protein transport protein SEC31 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1273 a.a.
329 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
J Cell Biol 190:347-361 (2010)
PubMed id: 20696705  
 
 
Structure of the Sec13-Sec16 edge element, a template for assembly of the COPII vesicle coat.
J.R.Whittle, T.U.Schwartz.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
23262493 A.J.Noble, Q.Zhang, J.O'Donnell, H.Hariri, N.Bhattacharya, A.G.Marshall, and S.M.Stagg (2013).
A pseudoatomic model of the COPII cage obtained from cryo-electron microscopy and mass spectrometry.
  Nat Struct Mol Biol, 20, 167-173.  
22193160 G.Zanetti, K.B.Pahuja, S.Studer, S.Shim, and R.Schekman (2012).
COPII and the regulation of protein sorting in mammals.
  Nat Cell Biol, 14, 20-28.  
21468892 C.Xu, and J.Min (2011).
Structure and function of WD40 domain proteins.
  Protein Cell, 2, 202-214.
PDB codes: 3e0c 3fm0 3i2n 3ow8
21478858 K.Witte, A.L.Schuh, J.Hegermann, A.Sarkeshik, J.R.Mayers, K.Schwarze, J.R.Yates, S.Eimer, and A.Audhya (2011).
TFG-1 function in protein secretion and oncogenesis.
  Nat Cell Biol, 13, 550-558.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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