spacer
spacer

PDBsum entry 3mpm

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 3mpm calculated with MOLE 2.0 PDB id
3mpm
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 1.47 25.4 0.66 0.00 9.2 81 1 2 1 7 2 0 0  5LK 1 A EDO 502 A
2 1.32 1.46 36.7 -0.68 -0.07 21.1 83 2 3 1 11 2 0 0  5LK 1 A EDO 502 A
3 1.16 1.22 15.0 0.35 0.08 17.1 84 2 2 0 4 0 0 0  
4 1.16 1.22 17.5 0.07 0.00 19.2 84 2 2 0 4 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer