spacer
spacer

PDBsum entry 3ml5

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 3ml5 calculated with MOLE 2.0 PDB id
3ml5
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.77 5.8 -0.37 0.18 12.9 62 2 1 0 1 2 0 0  
2 2.91 2.4 -1.61 -0.24 16.4 54 1 0 1 0 1 0 0  
3 2.29 6.4 -2.54 -0.53 30.1 79 2 1 0 1 0 1 0  
4 1.61 8.1 2.03 0.51 1.3 90 0 0 1 5 0 0 0  
5 1.57 8.8 1.13 0.11 1.8 87 0 0 1 5 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer