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PDBsum entry 3ml2

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Cleft analysis for: 3ml2 PDB id
3ml2
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1505.67 1.42 60.66 6 11.52 2 10.71 1 6 4 3 2 4 7 0  
2 1057.22 0.00 72.71 2 11.06 3 10.02 2 4 3 6 10 5 2 0 SU0 263[A], GOL 264[A] (24 atoms)
3 982.55 0.00 65.61 3 8.47 5 6.72 8 5 3 6 2 2 5 0  
4 866.95 0.00 56.10 10 5.23 8 8.00 7 3 2 2 5 1 4 0  
5 660.23 0.00 59.67 9 4.93 9 8.26 6 5 3 4 6 1 2 0  
6 421.45 0.00 60.07 8 5.75 7 8.94 3 4 0 1 3 3 0 0  
7 415.55 0.00 75.05 1 11.99 1 8.59 4 4 1 2 2 1 4 0  
8 375.05 0.00 65.14 4 10.21 4 8.55 5 1 2 5 1 1 1 0  
9 336.66 0.00 60.24 7 2.80 10 6.03 10 2 4 4 1 0 1 0  
10 334.55 0.00 64.94 5 7.97 6 6.16 9 1 2 2 3 2 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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