PDBsum entry 3mj8 Go to PDB code:  Tunnel analysis for: 3mj8 calculated with MOLE 2.0 PDB id 3mj8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.87 15.6 -1.00 -0.35 15.2 83 2 0 3 2 1 0 0   2 1.39 3.21 16.0 -0.98 -0.64 5.7 94 1 0 2 1 1 0 0   3 1.26 1.34 25.5 -0.60 -0.48 10.6 77 1 2 2 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.