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PDBsum entry 3mgr
Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 3mgr calculated with MOLE 2.0 PDB id
3mgr
Pores calculated on whole structure Pores calculated excluding ligands
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17 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.86 3.86 29.9 -1.61 -0.67 18.8 75 3 0 0 0 0 0 0  DG -
15 I DA 60 I DG 61 I DG 62 I DT 63 I MN 3138 I DA
-67 J DT -66 J DC -65 J DC -64 J DA -63 J DC -
62 J DC -61 J
2 2.84 2.93 30.6 -1.59 -0.67 18.6 81 4 0 0 0 0 0 0  DG -35 I DT -26 I DC -
25 I DT 50 I DA 51 I DG 52 I DT 53 I DA -46 J DA -
45 J DA 29 J DG 30 J DT 31 J
3 3.43 3.64 31.2 0.47 -0.07 3.8 91 1 0 3 3 1 1 0  DC -25 I DG 48 I DT 50 I DA 51 I DG -56 J DT -
54 J DA -53 J DC -52 J DT 20 J DG 21 J
4 3.73 3.94 35.9 -1.45 -0.73 15.6 85 3 1 2 1 0 0 0  DC -25 I DG -15 I DC -
14 I DG 61 I DG 62 I DT 63 I DA -67 J DG -
56 J DT 19 J DT 20 J
5 1.73 1.73 37.0 -1.15 -0.73 12.5 80 2 1 0 0 0 0 0  DG -16 I DG -
15 I DT 57 I DG 58 I DC 59 I DA 60 I DG 61 I DG
62 I DA -57 J DG -56 J DA -55 J DT -54 J DA -
53 J DT 19 J DT 20 J
6 1.74 1.74 40.9 -1.49 -0.64 16.9 85 4 2 2 2 0 0 0  DC -
25 I DT 57 I DG 58 I DC 59 I DA 60 I DG 61 I DA -
57 J DG -56 J DA -55 J DT -54 J DA -
53 J DT 19 J DT 20 J DG 21 J
7 2.75 2.74 41.5 -0.55 -0.71 5.4 88 2 0 1 1 1 0 0  CL 3145 G DC 34 I DC 35 I DA 36 I DA 37 I DA 38 I
DT -40 J DA -33 J DA -32 J DA -31 J
8 2.76 2.92 41.4 -1.67 -0.71 17.5 90 5 1 4 0 0 0 0  DA -46 I DA -45 I DA -
44 I DA 29 I DG 30 I DT 31 I DG -35 J DC -
25 J DC 41 J
9 1.34 1.43 42.4 -1.51 -0.68 17.4 80 7 0 0 0 0 0 0  DG -35 I DC -27 I DT -26 I DC -
25 I DT 50 I DA 51 I DG 52 I DA -46 J DA -
45 J DA 29 J DG 30 J DT 31 J
10 3.71 3.95 43.0 -1.51 -0.71 15.2 86 5 1 3 1 0 0 0  DC -25 I DC 59 I DA 60 I DG 61 I MN 3138 I DC -
65 J DC -64 J DA -63 J DC -62 J DC -61 J DG -
56 J DT 19 J DT 20 J
11 2.84 2.92 43.1 -1.40 -0.71 15.5 89 4 0 3 0 0 1 0  DG -35 I DC -25 I DT 50 I DG -56 J DA -46 J DA -
45 J DT 20 J DG 21 J DA 29 J DG 30 J DT 31 J
12 3.60 3.90 45.8 -1.73 -0.66 18.6 91 5 1 5 1 0 0 0  DC -64 I DA -63 I DC -62 I DC -61 I DG -
56 I DT 19 I DC -
25 J DC 59 J DA 60 J DG 61 J MN 3131 J
13 1.75 1.75 53.6 -1.33 -0.60 16.0 85 6 1 2 1 0 0 0  DT 57 I DG 58 I DC 59 I DA 60 I DG 61 I MN 3138 I
DC -65 J DC -64 J DA -63 J DC -62 J DC -61 J DA -
57 J DG -56 J DA -55 J DT -54 J DA -53 J
14 2.21 2.23 59.3 -1.58 -0.69 18.1 85 5 1 1 0 0 0 0  DA -46 I DA -45 I DA -
44 I DA 29 I DG 30 I DT 31 I DC 34 I DC 35 I DA
36 I DA 37 I DG -35 J DA -33 J DA -32 J DA -
31 J DC 41 J
15 2.21 2.24 60.2 -1.54 -0.63 15.7 93 6 0 6 1 0 0 0  DA 29 I DC 34 I DC 35 I DA 36 I DA 37 I DA -
33 J DA -32 J DA -31 J DC -25 J
16 1.75 1.97 68.1 -2.16 -0.53 23.9 72 6 0 1 1 0 2 0  DC -65 I DC -64 I DA -63 I DC -62 I DC -61 I DA -
1 I DT -
4 J DC 59 J DA 60 J DT 69 J DT 70 J DG 71 J MN
3131 J
17 2.19 2.23 68.9 -1.30 -0.63 13.4 91 7 0 6 2 1 0 0  CL 3145 G DA 29 I DA 37 I DA 38 I DT -40 J DA -
33 J DA -32 J DC -25 J
18 2.39 2.36 110.4 -1.51 -0.55 19.5 76 8 0 1 2 0 1 0  DC -5 I DT -4 I DG -2 I DA -
1 I DA 0 I DT 1 I DC 59 I DA 60 I DT 69 I DT 70 I
DG 71 I DA 72 I MN 3138 I MN 3142 I DC -65 J DC -
64 J DA -63 J DC -62 J DC -61 J DT -4 J DG -
2 J DT 0 J DT 1 J MN 3134 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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