spacer
spacer

PDBsum entry 3mdy

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 3mdy PDB id
3mdy
View options
Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 17150.91 7.48 69.10 3 13.07 2 20.94 1 49 33 55 65 31 39 0 LDN 1[A], LDN 1[C] (57 atoms)
2 2294.16 0.00 67.24 4 13.92 1 13.30 2 6 3 13 8 2 10 0  
3 1592.58 0.00 61.25 8 10.60 7 10.10 8 4 3 3 10 3 5 0  
4 1369.83 0.00 65.77 5 10.40 8 10.21 7 7 5 2 7 1 1 1  
5 1394.30 0.00 64.75 6 11.30 3 12.46 3 7 5 2 7 1 1 1  
6 1350.84 0.00 69.91 2 10.68 6 11.09 5 7 3 5 7 3 2 0  
7 1290.52 0.00 60.73 9 8.77 9 10.47 6 5 2 4 7 4 2 0  
8 908.72 0.00 72.13 1 11.12 4 11.18 4 6 2 5 3 2 2 0  
9 1163.11 0.00 62.42 7 5.55 10 9.05 9 6 1 5 9 3 1 1  
10 661.50 0.00 59.94 10 11.00 5 9.01 10 3 0 3 3 3 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
spacer
spacer