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PDBsum entry 3mdl

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3mdl calculated with MOLE 2.0 PDB id
3mdl
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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15 tunnels, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.62 36.8 0.68 0.07 6.1 81 2 1 3 7 4 1 0  1 1AG A
2 1.53 36.9 1.55 0.63 3.9 76 1 0 2 11 7 0 0  1 1AG A
3 1.62 45.8 0.52 0.38 9.7 76 3 1 3 9 6 1 0  1 1AG A
4 1.54 55.1 0.15 0.13 11.3 76 3 1 4 11 7 1 0  1 1AG A
5 1.27 73.4 -0.63 -0.21 14.4 80 6 4 5 7 4 1 0  671 NAG A,4 AKR B
6 1.40 10.8 0.11 0.14 2.1 80 0 0 3 2 2 1 0  
7 1.71 10.1 -2.15 -0.78 17.4 92 2 2 2 1 0 0 0  
8 1.73 8.0 0.86 0.03 1.9 77 0 0 1 4 0 2 0  
9 1.77 8.0 -2.30 -0.77 19.5 95 1 2 2 1 0 0 0  
10 1.30 11.0 -1.61 -0.63 18.0 92 1 2 2 4 0 0 0  
11 1.50 3.8 -1.82 -0.94 24.2 93 0 2 1 0 0 0 0  
12 1.62 11.8 0.59 -0.10 2.2 81 0 0 1 3 0 2 0  
13 1.57 3.6 -1.82 -0.94 24.2 93 0 2 1 0 0 0 0  
14 2.93 3.4 -1.82 -0.43 31.1 70 1 1 0 0 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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