PDBsum entry 3mda Go to PDB code:  Pore analysis for: 3mda calculated with MOLE 2.0 PDB id 3mda Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 pore, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.06 3.09 32.3 -2.13 -0.40 26.2 81 7 2 2 1 1 0 0  PPV 576 A DA 2 P DG 3 P DT 4 P DA 5 P DC 6 P CAR 7 P DC 4 T DT 7 T 2 1.33 1.33 38.3 -1.74 -0.41 23.1 84 6 5 3 4 2 0 0  PPV 576 A MG 577 A DC 6 P CAR 7 P 3 1.33 1.32 45.7 -1.57 -0.49 19.9 88 7 3 3 4 1 0 0  PPV 576 A MG 577 A DA 2 P DG 3 P DT 4 P DA 5 P DC 6 P CAR 7 P DC 4 T DT 7 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.