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PDBsum entry 3m37

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protein ligands metals Protein-protein interface(s) links
Hydrolase PDB id
3m37

 

 

 

 

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Contents
Protein chains
234 a.a. *
52 a.a. *
Ligands
M37
Metals
_CA
Waters ×199
* Residue conservation analysis
PDB id:
3m37
Name: Hydrolase
Title: Factor xa in complex with the inhibitor 1-[2-(aminomethyl)phenyl]-n- (3-fluoro-2'-sulfamoylbiphenyl-4-yl)-3-(trifluoromethyl)-1h-pyrazole- 5-carboxamide (dpc602)
Structure: Coagulation factor x. Chain: a. Fragment: peptidase s1. Synonym: stuart factor, stuart-prower factor. Coagulation factor x. Chain: l. Fragment: unp residues 127-178. Synonym: stuart factor, stuart-prower factor. Ec: 3.4.21.6
Source: Homo sapiens. Human. Organism_taxid: 9606. Organism_taxid: 9606
Resolution:
1.90Å     R-factor:   0.227     R-free:   0.262
Authors: R.S.Alexander
Key ref: J.R.Pruitt et al. (2003). Discovery of 1-(2-aminomethylphenyl)-3-trifluoromethyl-N- [3-fluoro-2'-(aminosulfonyl)[1,1'-biphenyl)]-4-yl]-1H-pyrazole-5-carboxyamide (DPC602), a potent, selective, and orally bioavailable factor Xa inhibitor(1). J Med Chem, 46, 5298-5315. PubMed id: 14640539
Date:
08-Mar-10     Release date:   21-Apr-10    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P00742  (FA10_HUMAN) -  Coagulation factor X from Homo sapiens
Seq:
Struc:
488 a.a.
234 a.a.
Protein chain
Pfam   ArchSchema ?
P00742  (FA10_HUMAN) -  Coagulation factor X from Homo sapiens
Seq:
Struc:
488 a.a.
52 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: Chains A, L: E.C.3.4.21.6  - coagulation factor Xa.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Preferential cleavage: Arg-|-Thr and then Arg-|-Ile bonds in prothrombin to form thrombin.

 

 
J Med Chem 46:5298-5315 (2003)
PubMed id: 14640539  
 
 
Discovery of 1-(2-aminomethylphenyl)-3-trifluoromethyl-N- [3-fluoro-2'-(aminosulfonyl)[1,1'-biphenyl)]-4-yl]-1H-pyrazole-5-carboxyamide (DPC602), a potent, selective, and orally bioavailable factor Xa inhibitor(1).
J.R.Pruitt, D.J.Pinto, R.A.Galemmo, R.S.Alexander, K.A.Rossi, B.L.Wells, S.Drummond, L.L.Bostrom, D.Burdick, R.Bruckner, H.Chen, A.Smallwood, P.C.Wong, M.R.Wright, S.Bai, J.M.Luettgen, R.M.Knabb, P.Y.Lam, R.R.Wexler.
 
  ABSTRACT  
 
Factor Xa, a serine protease, is at the critical juncture between the intrinsic and extrinsic pathways of the coagulation cascade. Inhibition of factor Xa has the potential to provide effective treatment for both venous and arterial thrombosis. We recently described a series of meta-substituted phenylpyrazoles that are highly potent, selective, and orally bioavailable factor Xa inhibitors. In this paper we report our efforts to further optimize the selectivity profile of our factor Xa inhibitors with a series of ortho- and/or para-substituted phenylpyrazole derivatives. The most potent compounds display sub-nanomolar inhibition constants for factor Xa and show greater than 1000-fold selectivity against other serine proteases. These compounds are also effective in a rabbit model of arteriovenous shunt thrombosis. Optimization of this series led to the preclinical development of DPC602, a 2-(aminomethyl)phenylpyrazole analogue, as a highly potent, selective, and orally bioavailable factor Xa inhibitor.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
19967784 Y.K.Lee, and M.R.Player (2011).
Developments in factor Xa inhibitors for the treatment of thromboembolic disorders.
  Med Res Rev, 31, 202-283.  
18529043 A.Sun, J.J.Yoon, Y.Yin, A.Prussia, Y.Yang, J.Min, R.K.Plemper, and J.P.Snyder (2008).
Potent non-nucleoside inhibitors of the measles virus RNA-dependent RNA polymerase complex.
  J Med Chem, 51, 3731-3741.  
18077174 Y.Imaeda, T.Miyawaki, H.Sakamoto, F.Itoh, N.Konishi, K.Hiroe, M.Kawamura, T.Tanaka, and K.Kubo (2008).
Discovery of sulfonylalkylamides: A new class of orally active factor Xa inhibitors.
  Bioorg Med Chem, 16, 2243-2260.  
16923021 K.M.Bromfield, N.S.Quinsey, P.J.Duggan, and R.N.Pike (2006).
Approaches to selective peptidic inhibitors of factor Xa.
  Chem Biol Drug Des, 68, 11-19.  
16296764 I.Gomez-Orellana (2005).
Strategies to improve oral drug bioavailability.
  Expert Opin Drug Deliv, 2, 419-433.  
15748229 V.Rajagopal, and D.L.Bhatt (2005).
Factor Xa inhibitors in acute coronary syndromes: moving from mythology to reality.
  J Thromb Haemost, 3, 436-438.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.

 

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