spacer
spacer

PDBsum entry 3m04

Go to PDB code: 
Top Page protein ligands metals links
Tunnel analysis for: 3m04 calculated with MOLE 2.0 PDB id
3m04
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.77 4.8 -0.99 -0.51 2.0 82 0 0 0 0 0 3 0  
2 1.52 11.0 -1.45 -0.69 8.1 75 3 0 2 0 0 1 0  
3 1.51 14.6 -1.74 -0.71 9.6 76 2 1 2 1 0 1 0  
4 1.62 6.6 1.32 0.25 6.8 92 0 1 0 4 0 0 0  
5 1.98 5.7 -0.45 -0.10 16.3 65 1 1 0 0 3 0 0  
6 1.31 8.1 -1.01 -0.67 14.0 77 1 2 1 1 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer