PDBsum entry 3ly2 Go to PDB code:  Pore analysis for: 3ly2 calculated with MOLE 2.0 PDB id 3ly2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.39 2.61 27.9 -2.43 -0.36 37.6 85 6 6 3 3 0 1 0   2 3.47 4.14 28.1 -0.93 0.19 9.5 82 2 1 4 3 2 2 0   3 3.29 3.37 31.8 -1.15 -0.05 9.4 84 2 2 5 3 2 2 0   4 4.02 5.01 33.1 -1.28 -0.14 8.3 82 4 1 6 2 2 3 0   5 2.00 3.61 50.4 -2.16 -0.57 24.5 82 4 6 4 2 1 2 0   6 3.09 3.26 56.9 -0.75 -0.16 11.9 84 4 3 9 4 2 3 0   7 2.04 2.39 59.8 -2.38 -0.38 32.0 81 11 8 7 6 1 1 0   8 1.60 1.77 60.4 -3.00 -0.61 36.2 90 10 6 9 1 0 0 0   9 2.03 2.36 64.5 -2.07 -0.28 35.0 84 12 12 5 6 0 2 0   10 1.92 2.81 67.2 -2.78 -0.72 24.9 87 7 7 11 2 0 0 0   11 2.40 2.56 67.9 -2.13 -0.37 27.2 82 11 10 8 5 2 1 0   12 1.95 1.94 72.2 -2.20 -0.72 22.7 88 5 6 6 1 0 0 0   13 1.31 1.45 79.8 -1.81 -0.24 29.8 78 10 9 6 9 4 1 1   14 2.11 2.11 89.5 -2.03 -0.39 28.7 84 16 11 8 6 2 1 0   15 2.05 2.80 91.4 -2.78 -0.61 34.1 86 15 12 9 2 0 1 0   16 2.03 2.43 97.1 -2.10 -0.42 30.0 85 16 12 8 7 1 1 0   17 1.93 3.82 100.2 -3.14 -0.63 33.9 84 16 13 10 2 0 1 0   18 1.77 4.33 100.3 -1.98 -0.43 28.1 86 12 12 11 7 1 1 0   19 2.19 2.27 122.5 -2.34 -0.40 32.4 82 21 17 9 7 2 2 0   20 2.11 2.48 130.1 -2.40 -0.44 33.1 83 21 18 9 8 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.