PDBsum entry 3lut

Pore analysis for: 3lut calculated with

MOLE 2.0

PDB id

3lut

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 pores, coloured by radius

7 pores, coloured by radius

7 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.24

2.24

25.6

-0.26

-0.14

10.6

80

1

3

4

6

1

0

0

2

2.94

3.24

27.7

-2.64

-0.80

23.8

76

2

3

3

0

0

1

1

3

2.94

3.24

28.4

-1.98

-0.52

19.7

72

2

2

2

1

2

1

1

4

2.77

3.38

33.7

-1.41

-0.51

12.4

79

2

2

3

3

2

1

1

5

1.69

3.62

89.9

1.23

0.55

3.3

78

1

1

4

5

5

2

1

6

1.70

3.63

91.2

1.15

0.54

3.9

74

1

2

3

6

7

2

1

7

1.95

3.25

31.9

-0.94

0.11

10.1

68

4

1

3

1

4

0

0

NAP 368 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.