PDBsum entry 3lnd

Pore analysis for: 3lnd calculated with

MOLE 2.0

PDB id

3lnd

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.04

2.61

26.9

-1.06

-0.40

8.3

88

0

2

3

4

2

1

0

2

1.44

1.44

39.9

-1.03

-0.01

15.7

82

3

5

3

3

3

0

0

3

1.35

1.35

42.0

-1.04

0.05

17.5

83

4

5

3

4

3

0

0

4

1.48

1.48

45.7

-0.64

-0.27

10.3

89

2

4

5

5

1

1

0

5

1.37

1.56

46.5

-0.38

-0.23

6.8

88

1

3

6

5

3

1

0

6

1.15

1.34

50.0

0.26

-0.03

4.5

79

1

2

5

9

6

0

0

7

1.40

1.73

51.8

-1.09

-0.27

7.3

74

2

2

3

1

6

1

0

8

1.91

2.20

64.2

-1.19

-0.15

10.0

67

5

4

3

1

8

0

0

9

1.17

1.32

65.7

-0.92

-0.14

7.4

82

2

2

4

3

3

1

0

10

1.91

2.17

85.2

-1.41

-0.22

12.7

71

5

5

4

1

8

1

0

11

1.22

1.38

107.3

-0.46

-0.07

13.9

82

5

8

4

10

5

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.