spacer
spacer

PDBsum entry 3lam

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3lam calculated with MOLE 2.0 PDB id
3lam
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.33 4.03 43.8 -2.12 -0.33 23.9 81 5 2 4 3 1 0 1  
2 1.24 1.24 47.9 -1.83 -0.56 22.6 76 6 4 2 5 3 0 0  
3 2.09 2.20 50.2 -0.92 -0.27 14.1 79 7 4 4 4 1 4 0  
4 1.24 1.23 55.7 -1.50 -0.46 21.1 80 7 5 3 6 3 0 0  
5 1.03 1.33 30.4 -0.02 -0.10 3.9 76 3 0 1 4 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer