spacer
spacer

PDBsum entry 3l9j

Go to PDB code: 
Top Page protein metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3l9j calculated with MOLE 2.0 PDB id
3l9j
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.19 8.7 -0.05 -0.41 4.2 84 1 0 2 2 1 1 0  
2 1.97 12.5 0.12 -0.39 3.5 91 1 0 3 2 1 0 0  
3 1.51 5.8 -1.51 -0.45 21.0 75 1 1 2 1 1 0 0  
4 1.59 8.7 0.27 -0.12 2.4 78 0 0 1 3 1 0 0  
5 1.39 10.4 -1.72 -0.72 14.6 80 1 1 3 1 1 0 0  
6 1.41 11.6 -0.24 -0.13 6.6 84 0 1 1 2 1 0 0  
7 2.10 7.4 -2.10 -0.25 27.0 70 2 1 1 1 2 0 0  
8 2.30 3.7 -1.07 -0.77 3.0 83 0 0 3 0 1 0 0  
9 2.08 5.3 -0.79 -0.42 14.2 67 2 0 0 0 0 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer