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PDBsum entry 3krk

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3krk calculated with MOLE 2.0 PDB id
3krk
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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21 tunnels, coloured by tunnel radius 27 tunnels, coloured by tunnel radius 27 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.30 34.5 0.56 0.05 4.8 75 2 0 5 5 3 1 0  671 NAG B
2 1.62 40.6 0.51 0.05 5.6 82 2 1 3 6 5 0 0  700 ACD A
3 1.62 41.7 1.54 0.64 3.1 76 1 0 3 10 9 0 0  700 ACD A
4 1.63 43.9 0.49 0.13 6.5 81 2 1 3 6 5 1 0  700 ACD A
5 1.30 45.3 0.32 0.00 7.0 78 3 1 6 5 3 1 0  671 NAG A
6 1.62 52.3 0.54 0.34 6.5 78 3 1 5 8 9 0 0  700 ACD A
7 1.61 52.5 0.29 0.13 8.5 78 3 1 5 9 8 1 0  700 ACD A
8 1.30 52.7 -0.72 -0.26 11.7 75 5 4 6 4 5 1 0  
9 1.54 10.9 -0.88 -0.50 17.3 82 2 1 1 2 0 0 0  
10 1.55 10.9 -0.71 -0.49 17.3 81 2 2 0 2 0 0 0  
11 1.51 15.2 -1.00 -0.49 21.4 81 2 1 0 2 0 1 0  
12 1.25 12.3 -0.48 -0.04 12.2 64 1 1 0 3 2 1 0  
13 1.30 5.7 -1.10 -0.09 17.4 66 1 1 0 2 1 0 0  
14 1.32 6.0 -1.27 -0.20 19.1 66 1 1 0 2 1 0 0  
15 1.43 11.6 -0.04 -0.25 5.7 79 1 0 1 4 0 2 0  
16 1.39 13.4 0.99 0.28 14.1 91 1 1 0 5 0 0 0  
17 1.46 13.7 0.74 0.02 13.4 85 1 2 0 5 0 0 0  
18 1.74 9.9 -2.10 -0.77 16.2 92 2 2 2 1 0 0 0  
19 1.74 10.0 -2.15 -0.63 19.0 92 2 2 2 1 0 0 0  
20 1.64 12.0 -1.78 -0.72 15.4 89 2 1 2 2 0 0 0  
21 1.64 12.1 -1.87 -0.60 18.0 89 2 1 2 2 0 0 0  
22 1.84 7.5 -2.03 -0.69 16.6 95 1 2 2 1 0 0 0  
23 1.82 6.2 0.88 0.07 1.9 77 0 0 1 4 0 2 0  
24 2.87 4.3 -0.62 -0.24 3.9 81 0 1 2 0 1 1 0  
25 1.48 3.8 -1.82 -0.94 24.2 93 0 2 1 0 0 0 0  
26 1.27 13.1 0.21 -0.32 3.9 79 1 0 1 4 0 2 0  
27 1.34 9.4 0.38 0.21 3.1 80 1 0 2 2 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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