PDBsum entry 3kqk Go to PDB code:  Tunnel analysis for: 3kqk calculated with MOLE 2.0 PDB id 3kqk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.55 34.9 -0.87 -0.28 12.8 81 4 1 1 5 2 2 0   2 1.28 1.56 35.3 -0.70 -0.29 13.6 84 3 3 1 6 2 0 0   3 1.29 1.56 39.0 -0.77 -0.36 9.7 88 2 2 3 5 2 0 1  DT 2 C DT 3 C DT 4 C 4 1.19 1.48 49.1 -0.60 -0.24 8.6 83 3 1 3 5 2 3 1  DT 3 C DT 4 C 5 1.28 1.55 67.5 -1.20 -0.42 14.1 86 5 2 5 5 2 1 0  DT 4 D DT 5 D 6 1.27 1.94 16.6 0.61 0.52 10.2 74 1 1 1 4 2 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.