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Ligand clusters for UniProt code P04062

Ligand clusters for P04062: Glucosylceramidase OS=Homo sapiens GN=GBA PE=1 SV=3

Top 6 (of 36) ligand clusters
Cluster 1.
8 ligand types
22 ligands
Cluster 2.
12 ligand types
13 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
3 ligand types
5 ligands
Representative protein: 2v3eA  
 

Structures

PDB   Schematic diagram
2v3eA    
2wcgA    
2xweA    
2vt0A    
2xwdA    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description


 
1. Ligand: NAG × 9
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1ogs(A), 2nt0(A), 2nt1(A), 3gxd(A), 3gxf(A), 3gxi(A), 3gxm(A), 3rik(A), 3ril(A).


 
2. Ligand: NDG × 2
2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose
PDB codes: 2f61(A), 2nsx(A).


 
3. Ligand: NAG-NAG-BMA-FUC × 3
BMA=Beta-D-Mannose, FUC=Alpha-L-Fucose, NAG=N-Acetyl-D-Glucosamine.
PDB codes: 2v3d(A), 2v3e(A), 2xwe(A).


 
4. Ligand: NAG-NAG-MAN × 3
MAN=Alpha-D-Mannose, NAG=N-Acetyl-D-Glucosamine.
PDB codes: 2v3f(A), 2vt0(A), 2wcg(A).


 
5. Ligand: NDG × 1
2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose
PDB code: 3keh(A).


 
6. Ligand: NAG-NAG × 2
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1y7v(A), 2j25(A).


 
7. Ligand: NAG-NAG-MAN-FUC × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose, FUC=Alpha-L-Fucose.
PDB code: 2xwd(A).


 
8. Ligand: NDG-NAG × 1
NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose, NAG=N-Acetyl-D-Glucosamine.
PDB code: 3ke0(A).

 

 Cluster 2 contains 12 ligand types

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Ligand Description


 
1. Ligand: INS × 1
1,2,3,4,5,6-Hexahydroxy-Cyclohexane
PDB code: 1y7v(A).


 
2. Ligand: NBV × 1
miglustat
(2r,3r,4r,5s)-1-Butyl-2-(Hydroxymethyl) piperidine-3,4,5-Triol
PDB code: 2v3d(A).


 
3. Ligand: GOL × 2
Glycerol
PDB codes: 2nsx(A), 2nt0(A).


 
4. Ligand: NND × 1
(2r,3r,4r,5s)-2-(Hydroxymethyl)-1- Nonylpiperidine-3,4,5-Triol
PDB code: 2v3e(A).


 
5. Ligand: SO4 × 1
Sulfate ion
PDB code: 1ogs(A).


 
6. Ligand: GOL × 1
Glycerol
PDB code: 3gxf(A).


 
7. Ligand: 3RK × 1
(3s,4r,5r,6s)-Azepane-3,4,5,6-Tetrol
PDB code: 3ril(A).


 
8. Ligand: AMF × 1
(3z,5s,6r,7s,8r,8as)-3-(Octylimino)hexahydro [1,3]thiazolo[3,4-A]pyridine-5,6,7,8-Tetrol
PDB code: 2xwe(A).


 
9. Ligand: BTB × 1
2-[Bis-(2-Hydroxy-Ethyl)-Amino]-2- Hydroxymethyl-Propane-1,3-Diol
PDB code: 2v3f(A).


 
10. Ligand: CBU × 1
(1r,2r,3s,4s,5s,6s)-Cyclohexane-1,2,3,4,5,6- Hexol
PDB code: 2vt0(A).


 
11. Ligand: LGS × 1
(3z,5s,6r,7s,8r,8ar)-3-(Octylimino)hexahydro [1,3]oxazolo[3,4-A]pyridine-5,6,7,8-Tetrol
PDB code: 2xwd(A).


 
12. Ligand: MT5 × 1
(3e,5r,6r,7s,8r,8ar)-3-(Octylimino) octahydroimidazo[1,5-A]pyridine-5,6,7,8- Tetrol
PDB code: 2wcg(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: NND × 1
(2r,3r,4r,5s)-2-(Hydroxymethyl)-1- Nonylpiperidine-3,4,5-Triol
PDB code: 2v3e(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG × 1
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB code: 2j25(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG × 1
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB code: 3gxd(A).

 

 Cluster 6 contains 3 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 2nt0(A).


 
2. Ligand: SO4 × 1
Sulfate ion
PDB code: 1ogs(A).


 
3. Ligand: GOL × 3
Glycerol
PDB codes: 3gxf(A), 3ke0(A), 3keh(A).

 

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