PDBsum entry 3kds Go to PDB code:  Tunnel analysis for: 3kds calculated with MOLE 2.0 PDB id 3kds Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.35 18.0 -0.52 -0.33 15.9 90 3 1 1 3 0 1 0   2 1.17 1.34 24.4 -0.79 -0.45 16.2 91 2 3 2 4 0 0 0   3 1.22 1.22 19.0 2.52 0.78 3.9 78 1 1 0 8 1 0 0   4 1.29 1.41 15.5 0.57 0.14 10.9 69 1 0 0 4 1 1 0   5 1.26 1.40 20.2 2.06 0.77 7.9 69 1 0 0 7 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.