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Ligand clusters for UniProt code P24300

Ligand clusters for P24300: Xylose isomerase OS=Streptomyces rubiginosus GN=xylA PE=1 SV=4

Top 6 (of 24) ligand clusters
Cluster 1.
35 ligand types
125 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1xibA  
 

Structures

PDB   Schematic diagram
1xibA    
4xisA    
3xisA    
1xisA    
2xisA    
 more ...

 

 Cluster 1 contains 35 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: GLC × 1
Alpha-D-Glucose
PDB code: 1xif(A).


 
2. Ligand: XYL × 2
D-Xylitol
PDB codes: 1xig(A), 2xis(A).


 
3. Ligand: SOR × 1
D-Sorbitol
PDB code: 1xih(A).


 
4. Ligand: LXC × 1
Beta-L-Xylopyranose
PDB code: 1gw9(A).


 
5. Ligand: XYS × 1
Xylopyranose
PDB code: 3xis(A).

_Zn
 
6. Metal: _ZN × 2
PDB codes: 4j4k(A),


 
7. Ligand: ASC × 1
vitamin c
Ascorbic acid
PDB code: 1xid(A).


 
8. Ligand: ASO × 1
1,5-Anhydrosorbitol
PDB code: 1xie(A).


 
9. Ligand: DFR × 1
3-Deoxy-3-Methyl-D-Fructose
PDB code: 9xia(A).


 
10. Ligand: XLS × 3
D-Xylose (linear form)
PDB codes: 1xic(A), 3xis(A), 8xia(A).


 
11. Ligand: XUL × 1
D-Xylulose
PDB code: 1xii(A).


 
12. Ligand: THE × 1
Threonate ion
PDB code: 1xij(A).


 
13. Ligand: MPD × 1
(4s)-2-Methyl-2,4-Pentanediol
PDB code: 1o1h(A).


 
14. Ligand: MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code: 1mnz(A).


 
15. Ligand: GOL × 1
Glycerol
PDB code: 2glk(A).


 
16. Ligand: TRS × 2
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB codes: 1mnz(A), 1o1h(A).

_Mn
 
17. Metal: _MN × 34
PDB codes: 1oad(A), 1xib(A), 1xic(A), 1xid(A), 1xie(A), 1xif(A), 1xig(A), 1xih(A), 1xii(A), 1xij(A), 1xis(A), 2glk(A), 3gnx(A), 3n4a(A), 4e3v(A), 4lnc(A), 4xis(A), 8xia(A), 9xia(A),

_Mg
 
18. Metal: _MG × 15
PDB codes: 1mnz(A), 1o1h(A), 1oad(A), 2g4j(A), 2xis(A), 3kbw(A), 3u3h(A), 3xis(A), 4duo(A), 4e3v(A), 4lnc(A).

_Ni
 
19. Metal: _NI × 13
PDB codes: 3kbn(A), 3kbv(A), 3kbw(A), 3kco(A), 3qys(A), 4dvo(A),

_Co
 
20. Metal: _CO × 10
PDB codes: 2gve(A), 4a8i(A), 4a8l(A), 4a8n(A), 4a8r(A),

 + more. Press for full list
 

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: LXC × 1
Beta-L-Xylopyranose
PDB code: 1gw9(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code: 1oad(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: TRS × 1
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB code: 1oad(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: MPD × 1
(4s)-2-Methyl-2,4-Pentanediol
PDB code: 1oad(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: PRO × 1
PDB code: 4e3v(A).

 

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