PDBsum entry 3kaf Go to PDB code:  Tunnel analysis for: 3kaf calculated with MOLE 2.0 PDB id 3kaf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.54 17.0 -0.69 -0.05 12.9 82 1 0 3 2 1 1 0   2 1.56 1.57 20.9 -1.87 -0.43 15.4 73 1 1 3 1 2 0 0   3 1.18 1.54 25.4 -1.15 -0.19 12.0 90 3 0 6 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.