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PDBsum entry 3k9x

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Hydrolase PDB id
3k9x
Contents
Protein chains
86 a.a.
238 a.a.
81 a.a.
Ligands
GOL ×6
MBM ×2
Metals
_CA ×2
_NA ×2
Waters ×669

References listed in PDB file
Key reference
Title Aroylguanidine-Based factor xa inhibitors: the discovery of bms-344577.
Authors Y.Shi, C.Li, S.P.O'Connor, J.Zhang, M.Shi, S.N.Bisaha, Y.Wang, D.Sitkoff, A.T.Pudzianowski, C.Huang, H.E.Klei, K.Kish, J.Yanchunas, E.C.Liu, K.S.Hartl, S.M.Seiler, T.E.Steinbacher, W.A.Schumacher, K.S.Atwal, P.D.Stein.
Ref. Bioorg Med Chem Lett, 2009, 19, 6882-6889.
PubMed id 19896847
Abstract
We report the design and synthesis of a novel class of N,N'-disubstituted aroylguanidine-based lactam derivatives as potent and orally active FXa inhibitors. The structure-activity relationships (SAR) investigation led to the discovery of the nicotinoyl guanidine 22 as a potent FXa inhibitor (FXa IC(50)=4 nM, EC(2xPT)=7 microM). However, the potent CYP3A4 inhibition activity (IC(50)=0.3 microM) of 22 precluded its further development. Detailed analysis of the X-ray crystal structure of compound 22 bound to FXa indicated that the substituent at the 6-position of the nicotinoyl group of 22 would be solvent-exposed, suggesting that efforts to attenuate the unwanted CYP activity could focus at this position without affecting FXa potency significantly. Further SAR studies on the 6-substituted nicotinoyl guanidines resulted in the discovery of 6-(dimethylcarbamoyl) nicotinoyl guanidine 36 (BMS-344577, IC(50)=9 nM, EC(2xPT)=2.5 microM), which was found to be a selective, orally efficacious FXa inhibitor with an excellent in vitro liability profile, favorable pharmacokinetics and pharmacodynamics in animal models.
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