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PDBsum entry 3k8m

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3k8m calculated with MOLE 2.0 PDB id
3k8m
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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25 tunnels, coloured by tunnel radius 25 tunnels, coloured by tunnel radius 25 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.25 38.0 -0.13 0.19 13.1 75 2 2 2 7 5 0 0  413 MSE A
2 1.25 43.6 0.79 0.54 6.1 71 2 4 0 9 6 1 0  413 MSE A,428 MSE A
3 1.28 51.1 -0.47 0.02 11.3 77 2 3 5 7 7 2 0  413 MSE A
4 1.35 14.5 -0.36 -0.37 1.8 90 0 0 3 2 1 1 0  
5 1.56 14.5 -0.97 -0.54 8.0 82 1 1 1 0 3 0 0  
6 1.56 15.4 -0.99 -0.51 7.2 80 1 1 1 0 3 1 0  
7 1.56 16.6 -0.33 -0.50 2.1 90 0 0 3 2 1 1 0  
8 2.70 7.3 -1.50 -0.77 10.8 96 1 1 3 0 0 0 0  332 MSE A
9 1.57 12.1 -1.10 -0.66 10.6 91 1 1 3 2 0 0 0  332 MSE A
10 1.56 7.4 0.24 -0.12 12.5 76 1 1 0 3 1 0 0  
11 1.69 9.9 -0.86 -0.63 14.2 73 2 1 0 1 1 0 0  
12 2.04 5.5 1.14 0.17 2.0 65 0 1 0 3 1 0 0  649 MSE A
13 2.20 5.5 0.63 0.10 2.3 77 0 1 1 2 1 0 0  649 MSE A
14 2.24 6.5 0.09 -0.21 2.5 93 0 0 1 1 0 1 0  649 MSE A
15 1.43 10.2 -0.08 0.10 5.6 78 1 1 0 2 1 0 0  
16 1.88 7.5 0.03 -0.18 15.7 77 1 2 0 2 0 0 0  
17 1.79 9.6 -1.44 -0.68 19.9 78 2 1 0 1 0 0 0  
18 1.53 3.0 -0.44 0.36 2.1 70 0 0 0 1 2 0 0  
19 2.34 9.7 -0.40 -0.34 8.3 72 1 1 0 1 2 0 0  408 MSE B
20 1.89 7.4 -1.68 -0.41 19.7 69 1 2 0 0 2 0 0  
21 1.71 5.4 -0.36 -0.62 8.5 99 0 1 2 1 0 0 0  
22 1.62 14.0 -0.67 -0.66 10.4 99 1 1 2 1 0 0 0  
23 1.88 9.2 -1.57 -0.43 19.8 71 1 3 0 0 2 0 0  
24 1.82 8.6 -1.05 -0.08 13.0 57 1 1 0 0 4 0 0  730 ACR A
25 1.72 6.2 -2.17 -0.90 28.0 85 1 2 0 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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