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PDBsum entry 3k7a

Go to PDB code: 
Top Page protein metals Protein-protein interface(s) links
Protein chain B PDB id
3k7a
Protein chain B highlighted
(click to view)
 
Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
15 sheets
15 beta hairpins
1 psi loop
10 beta bulges
50 strands
37 helices
50 helix-helix interacs
127 beta turns
24 gamma turns
Chain 1408 a.a.
Chain 1122 a.a.
Chain 266 a.a.
Chain 214 a.a.
Chain 84 a.a.
Chain 133 a.a.
Chain 118 a.a.
Chain 65 a.a.
Chain 114 a.a.
Chain 46 a.a.
Chain 187 a.a.
  
Chain (1122 residues)

UniProt code: P08518 (RPB2_YEAST)   [Pfam]

structural classification (7 domains) :
Domain Links CATH no.   Class Architecture
1 Unassigned = - -
2 Unassigned = - -
3 Unassigned = - -
4 3.90.1110.10 = Alpha Beta Alpha-Beta Complex
5 Unassigned = - -
6 2.40.270.10 = Mainly Beta Beta Barrel
7 2.40.50.150 = Mainly Beta Beta Barrel

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
Residue contacts:   
    to metal
PDB SITE records:   
 AC1  AC2  AC3  AC4  AC5
 AC6  AC7  AC8  AC9
PROSITE patterns:   
Low   High conservation

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


Domain 3
Topology diagram


Hera


Domain 4
Topology diagram


Hera


Domain 5
Topology diagram


Hera


Domain 6
Topology diagram


Hera


Domain 7
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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