PDBsum entry 3k5m Go to PDB code:  Pore analysis for: 3k5m calculated with MOLE 2.0 PDB id 3k5m Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.01 3.01 27.5 -1.48 -0.44 11.6 87 3 1 5 1 1 2 0   2 1.51 1.51 35.3 -1.25 -0.58 14.3 82 3 3 1 1 1 0 0  DG3 914 A CA 1002 A DG 913 P DT 804 T DG 805 T DA 807 T DC 808 T 3 1.56 1.56 51.1 -1.90 -0.44 26.1 78 7 3 2 3 1 1 0  DA 799 T DG 800 T DT 801 T 4 1.52 1.51 59.0 -0.97 -0.32 11.9 81 5 1 2 2 2 0 0  DG3 914 A DT 911 P DA 912 P DG 913 P DT 801 T DC 802 T DT 804 T DG 805 T DA 807 T DC 808 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.