PDBsum entry 3k2u Go to PDB code:  Tunnel analysis for: 3k2u calculated with MOLE 2.0 PDB id 3k2u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.40 19.0 -0.42 0.35 10.8 67 2 2 0 3 4 1 0   2 1.35 1.39 24.2 -0.28 0.21 9.4 72 1 3 0 4 4 1 0   3 1.32 1.40 27.6 -0.77 0.37 14.5 70 4 1 0 3 5 0 0   4 1.13 1.15 22.3 -0.07 -0.39 5.1 82 1 1 3 3 0 1 0   5 1.12 1.27 24.3 -0.62 -0.40 11.9 76 3 2 2 3 0 1 0   6 1.34 1.41 20.0 -0.09 -0.26 11.8 81 1 2 0 3 1 1 1   7 1.23 2.79 15.4 0.96 0.19 1.2 84 0 0 3 4 2 0 0   8 1.51 1.51 15.5 -1.06 -0.80 2.7 105 0 0 6 1 0 0 0   9 1.53 2.58 21.1 -1.20 -0.73 5.8 101 1 1 6 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.