PDBsum entry 3k1j Go to PDB code:  Pore analysis for: 3k1j calculated with MOLE 2.0 PDB id 3k1j Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.34 1.35 25.2 -2.61 -0.62 31.8 84 3 5 1 2 0 1 0   2 1.34 1.34 27.1 -2.39 -0.62 30.5 85 4 4 1 2 0 1 0   3 1.33 1.48 55.4 -0.69 -0.25 13.1 75 3 6 2 4 4 1 0   4 1.32 1.47 58.0 -0.09 -0.27 9.5 81 1 4 1 6 3 0 0  PE8 643 A PE4 644 A 5 1.72 1.89 59.9 -0.12 -0.06 11.2 83 3 3 3 10 2 1 0  PE8 643 A 6 1.18 1.37 71.2 -0.75 -0.08 13.9 76 5 3 2 7 5 0 0  PE8 643 A PE4 644 A 7 1.18 1.37 72.8 -1.93 -0.29 25.2 76 9 9 1 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.