 |
PDBsum entry 3jvt
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3jvt calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3jvt
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
6 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.72 |
1.80 |
15.9 |
-0.96 |
-0.22 |
17.5 |
75 |
|
2 |
0 |
0 |
3 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.48 |
1.73 |
18.7 |
-1.21 |
-0.23 |
18.3 |
77 |
2 |
1 |
3 |
3 |
1 |
1 |
0 |
|
|
3 |
 |
1.48 |
1.72 |
19.9 |
-1.12 |
-0.32 |
15.6 |
73 |
2 |
1 |
2 |
3 |
1 |
1 |
0 |
|
|
4 |
 |
1.48 |
1.74 |
23.7 |
-0.81 |
-0.25 |
15.3 |
72 |
2 |
3 |
1 |
4 |
2 |
0 |
0 |
|
|
5 |
 |
1.48 |
1.74 |
26.0 |
-1.09 |
-0.27 |
18.0 |
74 |
3 |
2 |
2 |
3 |
2 |
0 |
0 |
|
 |
6 |
 |
1.20 |
1.38 |
17.8 |
1.08 |
0.44 |
15.2 |
82 |
1 |
2 |
1 |
7 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program