PDBsum entry 3jpt Go to PDB code:  Tunnel analysis for: 3jpt calculated with MOLE 2.0 PDB id 3jpt Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.17 38.0 -1.30 0.19 22.6 80 5 3 1 2 2 0 0  GFC 338 A DT 6 P DG 7 P DC 8 P DG 9 P DOC 10 P DC 6 T DG 7 T DC 8 T 2 1.17 1.17 38.9 -2.49 -0.45 27.2 83 5 7 2 1 2 0 0  GFC 338 A NA 340 A DG 9 P DOC 10 P DG 7 T DC 8 T 3 1.17 1.17 46.1 -2.47 -0.56 30.1 86 5 7 2 3 1 0 0  GFC 338 A MG 339 A NA 340 A DG 9 P DOC 10 P DG 7 T DC 8 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.