PDBsum entry 3jby

Tunnel analysis for: 3jby calculated with

MOLE 2.0

PDB id

3jby

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

2.01

26.4

1.50

0.65

12.3

66

2

1

0

8

0

1

1

2

1.18

2.06

21.4

2.36

0.65

2.7

77

0

1

0

9

0

1

1

3

1.30

1.34

22.1

1.77

0.38

3.4

79

0

1

0

8

0

1

1

4

1.14

2.07

25.3

1.60

0.52

9.8

73

1

1

0

10

1

1

0

5

1.30

2.14

26.0

1.32

0.37

9.7

75

1

1

0

9

1

1

0

6

1.32

2.83

15.8

0.07

0.47

14.2

74

1

1

1

2

2

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.