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PDBsum entry 3jbw
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 3jbw calculated with MOLE 2.0 PDB id
3jbw
Pores calculated on whole structure Pores calculated excluding ligands
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24 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.41 1.41 55.8 -1.55 -0.45 21.1 77 10 0 2 1 1 0 0  DG 24 F DT 25 F DA 26 F DA 24 G DT 33 G DA 34 G
DC 35 G DT 36 G DT 9 H DA 10 H DT 15 H DC 16 H DC
17 H
2 1.83 3.04 71.3 -1.63 -0.68 11.8 86 4 2 5 1 1 0 1  DA 24 G DC 25 G DA 26 G DC 35 G DT 36 G DA 37 G
DC 1 H DT 15 H DC 16 H DC 23 H DT 24 H DG 25 H DG
26 H
3 1.44 1.44 76.4 -1.05 -0.68 13.0 76 5 1 0 1 0 0 0  DA 24 G DC 25 G DA 26 G DG 32 G DT 33 G DC 35 G
DT 36 G DT 9 H DA 10 H DT 15 H DC 16 H DC 23 H DT
24 H DG 25 H DG 26 H
4 1.86 3.07 79.9 -1.65 -0.54 16.0 86 7 1 5 4 1 0 1  DG 32 G DT 33 G DC 35 G DT 36 G DA 37 G DC 1 H DA
4 H DG 5 H DT 6 H DG 7 H DG 8 H DT 9 H DA 10 H
5 1.43 1.43 89.7 -1.51 -0.66 19.4 83 7 2 0 2 0 0 0  DG 14 G DT 15 G DA 16 G DA 24 G DC 25 G DG 32 G
DT 33 G DC 35 G DT 36 G DT 9 H DA 10 H DT 15 H DC
16 H DG 25 H DG 26 H DC 27 H
6 1.21 1.25 93.4 -1.38 -0.49 13.7 79 5 5 4 2 2 2 1  DA 37 F DG 38 F DA 39 F DC 40 F DA 41 F DG 42 F
DG 53 G DG 54 G DT 5 I DG 7 I DC 8 I DC 9 I DT 10
I DG 11 J DT 12 J
7 1.86 3.25 98.0 -1.36 -0.68 11.4 87 5 1 5 3 2 0 1  DC 39 G DA 40 G DC 41 G DC 1 H DA 2 H DC 3 H DA 4
H DG 8 H DT 9 H DA 10 H
8 1.22 1.25 100.0 -1.42 -0.50 14.5 80 7 7 4 4 2 5 0  DA 37 F DG 38 F DG 32 G DT 33 G DC 39 G DA 40 G
DC 41 G DG 53 G DG 54 G DG 8 H DT 9 H DA 10 H DC
9 I DT 10 I DG 11 J DT 12 J
9 1.82 2.01 103.5 -0.36 -0.32 8.6 81 4 3 4 4 5 4 1  DA 10 E DC 11 E DA 12 E DG 13 E DT 25 F DA 26 F
DG 27 F DC 28 F DA 29 F
10 2.60 3.82 101.9 -1.20 -0.56 14.5 84 3 4 4 3 1 4 1  DA 37 F DG 38 F DA 39 F DC 40 F DA 41 F DG 42 F
DC 39 G DA 40 G DC 41 G DG 8 H DT 9 H DA 10 H DT
5 I DG 7 I DC 8 I DC 9 I DT 10 I
11 2.18 2.18 122.9 -1.56 -0.68 17.8 78 8 2 2 1 2 0 0  DG 24 F DT 25 F DA 26 F DA 24 G DA 34 G DC 35 G
DT 36 G DA 37 G DC 39 G DA 40 G DC 41 G DC 1 H DA
2 H DC 3 H DA 4 H DG 8 H DT 9 H DA 10 H DT 15 H
DC 16 H DC 17 H
12 1.97 2.64 130.1 -0.93 -0.37 12.0 77 4 8 5 4 5 9 2  DA 36 F DA 37 F DG 38 F DA 39 F DC 40 F DA 41 F
DG 42 F DT 46 G DA 47 G DA 48 G DT 5 I DG 7 I DC
8 I DC 9 I DT 10 I
13 1.37 1.48 137.0 -1.41 -0.51 15.1 82 7 7 5 5 3 5 0  DA 37 F DG 38 F DC 39 G DA 40 G DC 41 G DG 53 G
DG 54 G DG 8 H DT 9 H DA 10 H DC 9 I DT 10 I DG
11 J DT 12 J
14 1.20 3.26 144.2 -1.18 -0.27 13.7 79 7 11 7 9 9 10 1  DA 36 F DA 37 F DG 38 F DT 46 G DA 47 G DA 48 G
15 1.30 1.37 148.6 -0.95 -0.38 11.5 79 7 6 6 5 7 7 1  DA 48 G DG 49 G DA 50 G DC 51 G DA 52 G DG 53 G
DT 5 J DG 6 J DG 7 J DC 8 J DT 10 J DT 12 J
16 2.04 2.02 155.7 -1.32 -0.73 15.3 81 8 3 1 1 1 0 0  DA 24 G DC 25 G DA 26 G DC 35 G DT 36 G DA 37 G
DC 39 G DA 40 G DC 41 G DC 1 H DA 2 H DC 3 H DA 4
H DG 8 H DT 9 H DA 10 H DT 15 H DC 16 H DC 23 H
DT 24 H DG 25 H DG 26 H
17 1.96 2.60 163.3 -0.92 -0.39 12.8 80 6 9 6 7 6 12 1  DA 36 F DA 37 F DG 38 F DC 39 G DA 40 G DC 41 G
DT 46 G DA 47 G DA 48 G DG 8 H DT 9 H DA 10 H
18 0.92 0.92 170.2 -1.34 -0.74 13.5 87 7 5 5 1 1 0 1  DC 1 E DA 2 E DC 3 E DA 10 E DC 11 E DA 12 E DG
13 E DT 25 F DA 26 F DG 27 F DC 28 F DA 29 F DC
30 F
19 2.07 2.04 168.9 -1.53 -0.72 18.2 85 9 4 2 2 1 0 0  DG 14 G DT 15 G DA 16 G DA 24 G DC 25 G DC 35 G
DT 36 G DA 37 G DC 39 G DA 40 G DC 41 G DC 1 H DA
2 H DC 3 H DA 4 H DG 8 H DT 9 H DA 10 H DT 15 H
DC 16 H DG 25 H DG 26 H DC 27 H
20 1.31 1.32 182.2 -1.23 -0.52 15.7 83 9 7 5 5 3 5 0  DA 10 E DC 11 E DA 12 E DG 13 E DT 25 F DA 26 F
DG 27 F DC 28 F DA 29 F DA 48 G DG 49 G DA 50 G
DC 51 G DA 52 G DG 53 G DT 5 J DG 6 J DG 7 J DC 8
J DT 10 J DT 12 J
21 1.14 1.47 192.8 -0.42 -0.16 14.6 81 9 5 5 10 6 0 1  DG 14 G DT 15 G DA 16 G DA 24 G DC 25 G DA 34 G
DT 15 H DC 16 H DC 17 H DG 25 H DG 26 H DC 27 H
22 2.42 2.59 210.6 -1.42 -0.58 18.7 82 9 12 5 4 1 7 1  DA 10 E DC 11 E DA 12 E DG 13 E DT 25 F DA 26 F
DG 27 F DC 28 F DA 29 F DA 36 F DA 37 F DG 38 F D
A 39 F DC 40 F DA 41 F DG 42 F DT 46 G DA 47 G DA
48 G DT 5 I DG 7 I DC 8 I DC 9 I DT 10 I

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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