PDBsum entry 3jap

Tunnel analysis for: 3jap calculated with

MOLE 2.0

PDB id

3jap

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1.09

173.1

-0.98

-0.45

12.1

G 1164 2 A 1165 2 G 1166 2 U 1265 2 G 1266 2 G
1267 2 G 1433 2 U 1448 2 G 1464 2 C 1465 2 G 1486
2 U 1487 2 A 1490 2 A 1491 2 C 1492 2 C 1493 2 U
1577 2 C 1578 2 C 1579 2 A 1584 2 A 1585 2 G 1586
2 C 1587 2 G 1588 2 C 1589 2 A 1590 2 A 1591 2 U
1593 2 C 1594 2 C 1597 2 A 1598 2 G 1599 2 G 1608
2 A 1609 2

1.17

1.53

238.9

-0.58

-0.70

5.8

C 32 1 A 315 2 U 348 2 U 349 2 A 618 2 A 620 2 A
621 2 A 622 2 G 623 2 C 624 2 U 628 2 A 970 2 G
971 2 A 972 2 A 1022 2 U 1023 2 A 1024 2 A 1025 2
G 1113 2 U 1119 2 C 1120 2 C 1127 2 U 1128 2 G
1140 2 A 1141 2 A 1142 2 U 1143 2 U 1144 2 G 1145
2 A 1146 2 C 1147 2 G 1148 2 G 1149 2 A 1150 2 A
1151 2 G 1152 2 C 1161 2 G 1163 2 G 1164 2 A 1165
2 G 1166 2 U 1167 2 G 1464 2 C 1465 2 C 1468 2 A
1571 2 G 1572 2 A 1575 2 U 1576 2 U 1577 2 C 1578
2 C 1579 2 A 1584 2 A 1585 2 G 1586 2 G 1608 2 A
1609 2 C 1618 2 U 1619 2 C 1621 2 C 1622 2 C 1623
2 U 1624 2 U 1625 2 U 1626 2 G 1627 2 U 1628 2 A
1629 2 C 1770 2 C 1771 2 G 1772 2 G 1790 2 G 1791
2 MG 1805 2 MG 1825 2 C 11 3 U 12 3 UNK 152 p UNK
155 p UNK 156 p