PDBsum entry 3j9t Go to PDB code:  Tunnel analysis for: 3j9t calculated with MOLE 2.0 PDB id 3j9t Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.61 95.9 0.14 0.07 10.3 78 6 4 8 17 4 0 1   2 1.24 1.61 99.9 0.20 0.11 11.8 78 7 5 5 19 4 1 1   3 1.19 2.98 22.7 0.98 0.21 4.9 81 1 2 2 6 1 0 0   4 1.22 1.40 16.9 1.16 0.30 1.5 86 0 0 1 7 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.