PDBsum entry 3j98 Go to PDB code:  Pore analysis for: 3j98 calculated with MOLE 2.0 PDB id 3j98 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.33 3.63 29.7 -1.43 -0.44 19.6 85 2 3 4 2 0 0 0   2 1.47 1.48 59.7 -2.17 -0.62 22.7 82 6 6 5 3 1 0 0   3 1.94 2.47 65.9 -2.23 -0.59 17.6 83 7 4 6 1 1 2 0   4 1.66 3.18 84.2 -1.04 -0.33 16.8 82 5 9 7 8 3 3 0   5 1.57 1.89 89.0 -1.92 -0.42 25.7 78 9 10 3 3 2 4 1   6 1.67 1.87 104.3 0.03 -0.06 11.6 79 4 5 2 11 3 2 1   7 1.23 1.60 121.3 -2.51 -0.62 29.9 87 10 16 8 5 3 0 0   8 1.47 1.54 136.3 -1.33 -0.31 21.3 85 12 7 9 11 2 2 0   9 1.47 1.46 143.2 -2.64 -0.58 30.6 85 12 14 12 4 4 0 0   10 1.74 1.89 171.8 -0.47 -0.26 12.7 82 9 12 10 21 3 4 0   11 1.30 1.60 175.9 -1.65 -0.41 23.2 81 15 17 9 13 2 3 1   12 1.30 1.73 185.9 -1.06 -0.32 19.8 83 14 15 10 20 2 2 0   13 1.56 2.82 186.1 -2.39 -0.63 30.7 84 19 19 14 7 3 0 0   14 1.28 1.78 191.3 -1.24 -0.28 20.9 81 17 15 11 15 5 1 0   15 1.06 1.03 195.1 -1.27 -0.37 19.9 80 12 14 9 16 5 4 0   16 1.53 2.79 200.7 -2.08 -0.55 22.4 80 14 14 12 6 4 1 0   17 1.24 1.20 207.0 -1.32 -0.32 20.8 80 17 11 8 17 4 4 1   18 1.91 1.97 219.9 -2.49 -0.62 27.7 84 14 22 19 6 5 0 1   19 1.20 1.15 232.4 -1.37 -0.32 19.9 78 18 16 11 14 6 8 0   20 1.46 1.50 229.2 -1.11 -0.32 18.9 79 13 18 10 15 3 6 1   21 1.41 1.59 249.0 -0.88 -0.25 16.9 85 11 14 11 23 1 2 1   22 1.40 1.57 250.1 -1.75 -0.54 21.2 85 12 15 13 14 1 0 0   23 1.76 1.80 278.3 -1.06 -0.30 17.8 80 18 23 16 20 5 8 0   24 1.30 1.42 288.7 -2.10 -0.61 27.1 83 23 26 22 10 2 0 0   25 1.99 1.94 334.4 -1.65 -0.38 21.9 79 24 26 20 15 8 7 0   26 1.51 1.69 334.3 -1.21 -0.40 16.9 86 15 14 21 23 2 4 0   27 1.20 1.56 400.6 -1.05 -0.32 17.1 83 19 22 15 30 4 2 0   28 1.52 1.51 451.0 -1.33 -0.33 18.5 81 28 23 20 30 9 7 0   29 1.27 1.82 440.8 -1.43 -0.38 19.4 83 26 29 25 29 7 4 0   30 1.28 1.87 446.2 -1.68 -0.43 22.8 82 35 41 31 23 8 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.