PDBsum entry 3j5m Go to PDB code:  Tunnel analysis for: 3j5m calculated with MOLE 2.0 PDB id 3j5m Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   22 tunnels, coloured by tunnel radius 22 tunnels, coloured by tunnel radius 22 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.55 49.3 -0.57 -0.33 13.3 89 4 3 4 6 0 0 0   2 1.14 1.55 49.3 -0.49 -0.32 12.8 89 4 3 4 6 0 0 0   3 1.14 1.55 49.3 -0.57 -0.33 13.3 89 4 3 4 6 0 0 0   4 1.20 1.57 54.2 0.47 0.14 4.3 82 2 2 6 8 3 1 0   5 1.20 1.57 54.3 0.43 0.12 4.5 82 2 2 6 8 3 1 0   6 1.20 1.57 54.3 0.47 0.14 4.3 82 2 2 6 8 3 1 0   7 1.19 1.91 85.3 -0.24 0.00 10.2 77 8 3 7 7 4 2 1   8 1.22 1.93 85.3 -0.17 0.02 9.9 77 8 3 7 7 4 2 1   9 1.22 1.93 85.4 -0.17 0.02 9.9 77 8 3 7 7 4 2 1   10 1.19 1.34 100.3 -0.80 -0.18 14.1 84 7 4 7 7 2 1 0  UNK 9 B UNK 10 B UNK 9 F UNK 10 F UNK 12 F UNK 16 F UNK 10 J UNK 14 J UNK 18 J UNK 21 J 11 1.24 1.64 105.9 -0.07 0.02 10.2 79 7 5 6 12 4 2 2  UNK 9 F UNK 10 F UNK 11 F 12 1.24 1.64 105.9 -0.07 0.02 10.2 79 7 5 6 12 4 2 2  UNK 9 J UNK 10 J UNK 11 J 13 1.19 1.66 114.0 -0.61 -0.19 12.5 75 12 4 7 10 4 2 1  UNK 9 J 14 1.19 1.66 114.0 -0.65 -0.20 13.0 75 12 4 7 10 4 2 1  UNK 9 B 15 1.19 1.66 114.0 -0.61 -0.19 12.5 75 12 4 7 10 4 2 1  UNK 9 F 16 1.19 1.66 114.0 -0.66 -0.20 13.1 75 12 4 7 10 4 2 1  UNK 9 B 17 1.21 1.49 114.1 -0.65 -0.20 12.8 75 12 4 7 10 4 2 1  UNK 9 J 18 1.21 1.49 114.1 -0.64 -0.20 12.8 75 12 4 7 10 4 2 1  UNK 9 F 19 1.26 1.99 119.4 -0.38 -0.05 13.4 79 9 5 6 12 4 2 2  UNK 10 B UNK 11 B UNK 14 B UNK 9 F UNK 10 F UNK 9 J UNK 10 J 20 1.24 1.64 134.0 -0.99 -0.34 14.2 79 13 5 6 8 2 4 0  UNK 9 F 21 1.24 1.64 134.0 -0.98 -0.34 13.8 79 13 5 6 8 2 4 0  UNK 9 J 22 1.24 1.64 134.1 -0.98 -0.32 14.1 79 13 5 6 8 2 4 0  UNK 9 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.