PDBsum entry 3j4q

Pore analysis for: 3j4q calculated with

MOLE 2.0

PDB id

3j4q

Pores calculated on whole structure

Pores calculated excluding ligands

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17 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.21

2.67

38.3

-0.92

-0.12

12.8

84

2

1

5

3

2

0

0

2

1.24

1.26

48.7

-0.05

-0.20

10.4

89

3

2

4

8

0

0

1

3

1.73

3.15

103.1

-1.74

-0.47

19.0

84

7

9

6

7

2

2

0

4

1.48

1.67

108.6

-2.35

-0.52

27.0

84

11

5

8

4

1

1

0

5

1.23

1.27

122.0

-0.52

-0.20

12.9

88

8

4

6

9

0

1

0

6

1.93

3.74

26.4

0.01

0.10

13.4

81

2

2

3

4

2

0

0

7

1.24

1.26

26.6

0.41

-0.11

8.2

90

2

2

1

7

0

0

0

8

1.47

2.27

31.4

-1.15

-0.22

16.4

82

2

1

2

1

2

0

1

9

2.00

2.81

33.3

-0.43

-0.16

6.3

79

3

1

1

7

3

3

0

10

1.24

1.26

48.6

-0.05

-0.20

10.4

89

3

2

4

8

0

0

1

11

1.49

2.28

52.4

-0.44

-0.07

10.2

86

2

1

5

7

3

2

1

12

1.43

2.28

58.5

-0.37

-0.15

13.6

81

5

2

2

7

1

0

1

13

1.71

3.09

75.9

-1.76

-0.41

22.2

85

6

7

5

8

1

0

0

14

1.48

1.67

87.2

-2.35

-0.54

27.4

81

10

5

5

3

1

1

0

15

1.22

1.29

116.8

-1.82

-0.45

26.4

79

8

7

4

4

2

2

0

16

1.19

1.30

134.2

-1.46

-0.36

24.1

79

10

9

5

6

3

2

0

17

1.23

1.54

30.7

-0.58

0.05

17.7

79

3

2

1

5

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.