PDBsum entry 3j3u Go to PDB code:  Tunnel analysis for: 3j3u calculated with MOLE 2.0 PDB id 3j3u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.03 2.47 51.8 -0.05 0.16 23.0 76 6 7 0 13 2 0 0   2 1.20 1.95 115.6 0.15 0.05 15.5 81 8 10 2 23 2 3 0   3 1.51 1.70 21.1 0.27 0.30 5.6 72 2 1 1 2 5 0 0   4 1.27 1.43 23.6 0.59 0.30 8.3 80 1 1 2 3 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.