PDBsum entry 3j3s Go to PDB code:  Tunnel analysis for: 3j3s calculated with MOLE 2.0 PDB id 3j3s Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.29 111.4 -0.58 -0.06 16.9 80 10 6 2 14 6 2 0   2 1.17 1.29 115.9 -0.70 -0.07 15.3 80 8 7 7 18 8 3 0   3 1.17 1.29 130.5 -0.72 -0.06 20.0 83 8 11 4 22 8 1 0   4 1.17 1.29 131.0 -0.36 -0.05 17.2 85 7 12 5 22 6 1 0   5 1.16 1.28 147.7 -0.67 -0.15 19.3 82 11 12 4 23 8 1 0   6 1.16 1.28 149.8 -0.88 -0.14 19.7 82 12 10 6 21 10 2 0   7 1.15 1.24 156.6 -0.79 -0.19 16.3 82 13 13 6 22 6 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.