PDBsum entry 3j2u Go to PDB code:  Pore analysis for: 3j2u calculated with MOLE 2.0 PDB id 3j2u Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.54 3.34 49.8 -1.35 -0.16 7.0 85 1 3 4 3 2 1 0   2 2.43 3.01 50.4 -1.71 -0.36 16.6 78 4 5 3 4 3 0 1   3 1.62 1.61 52.7 -1.99 -0.30 20.1 82 3 4 4 3 2 1 0   4 2.51 2.71 69.4 -1.34 -0.17 19.8 77 9 3 6 5 2 3 0   5 1.17 1.17 91.0 -0.85 -0.13 15.4 82 4 5 3 6 3 0 1   6 1.38 1.40 110.4 -2.01 -0.36 20.1 80 10 7 10 5 4 2 0   7 1.18 1.63 112.6 -0.97 -0.23 10.6 89 2 4 7 6 3 0 0   8 1.18 1.63 119.7 -0.97 -0.17 12.0 83 4 5 6 8 4 0 0   9 1.34 1.63 124.8 -2.04 -0.47 21.1 80 9 4 7 5 2 1 0   10 1.32 1.40 131.6 -2.03 -0.47 20.6 80 9 4 7 5 2 1 0   11 1.33 1.42 154.1 -2.21 -0.62 23.0 86 16 10 14 4 0 3 0   12 1.39 1.40 159.3 -1.64 -0.40 18.5 83 15 8 13 5 2 6 0   13 1.76 2.01 158.7 -2.13 -0.55 24.8 85 18 12 14 9 2 2 0   14 1.79 1.96 163.9 -1.71 -0.38 21.3 83 17 10 13 9 4 5 0   15 1.63 1.75 174.5 -2.01 -0.39 19.1 81 17 10 16 7 6 1 0   16 1.65 1.71 227.0 -2.14 -0.57 21.5 85 23 14 21 6 2 2 0   17 1.27 1.27 42.6 -1.48 -0.48 17.6 82 3 1 2 3 2 1 0   18 1.27 1.27 42.6 -1.38 -0.46 17.1 82 3 1 2 3 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.