PDBsum entry 3j1s Go to PDB code:  Tunnel analysis for: 3j1s calculated with MOLE 2.0 PDB id 3j1s Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.13 16.3 0.17 -0.37 5.5 80 0 1 4 4 1 1 1   2 1.13 1.13 17.9 0.05 -0.37 4.6 84 0 1 4 4 1 1 0   3 1.21 2.93 20.3 0.27 -0.29 4.6 90 1 0 4 3 0 0 0   4 1.30 1.50 25.3 0.26 0.34 9.8 71 3 1 0 4 4 1 0   5 1.28 1.42 26.5 0.32 0.37 9.6 70 3 1 0 4 5 1 0   6 1.29 1.43 26.8 0.59 0.49 7.1 67 2 1 0 5 5 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.