PDBsum entry 3j0a

Pore analysis for: 3j0a calculated with

MOLE 2.0

PDB id

3j0a

Pores calculated on whole structure

Pores calculated excluding ligands

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20 pores, coloured by radius

8 pores, coloured by radius

8 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

1.43

35.3

2.26

0.71

1.6

87

0

1

3

12

1

0

0

2

1.21

1.28

60.4

0.83

0.21

8.6

73

0

3

2

10

3

1

3

NAG 1 J

3

1.23

1.26

78.1

1.30

0.46

8.7

77

5

2

3

16

3

0

0

4

1.24

1.62

101.3

1.69

0.62

5.9

80

5

1

6

26

5

0

0

5

1.24

1.26

192.0

0.75

0.54

10.2

71

13

2

10

26

18

1

1

NAG 1 C

6

1.45

2.93

54.8

-0.61

-0.12

17.1

81

5

4

5

4

2

0

1

7

1.35

2.03

69.8

-2.36

-0.54

26.2

74

9

6

4

0

3

2

1

8

1.35

2.05

89.3

-1.20

-0.27

21.1

78

6

9

4

4

3

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.