PDBsum entry 3itx

Tunnel analysis for: 3itx calculated with

MOLE 2.0

PDB id

3itx

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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without HETATM:

9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.37

1.43

58.6

-1.71

-0.39

18.3

75

4

5

5

2

8

1

0

2

1.27

1.39

60.8

-1.74

-0.37

17.7

76

4

5

5

1

8

1

0

3

1.34

1.36

61.5

-1.80

-0.39

19.9

75

4

6

5

2

8

1

0

4

1.29

1.30

61.9

-1.73

-0.36

18.5

74

4

5

5

1

9

1

0

5

1.30

1.30

63.2

-1.84

-0.34

19.0

76

4

6

5

1

8

1

0

6

1.33

1.42

63.4

-1.78

-0.34

18.9

74

4

6

5

1

9

1

0

7

1.51

1.51

31.8

-1.17

-0.53

9.2

93

2

1

8

2

1

1

0

8

1.19

1.54

30.9

-1.55

-0.65

12.7

84

2

2

6

0

3

1

0

9

1.48

1.48

31.9

-1.25

-0.53

10.7

93

2

1

8

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.