 |
PDBsum entry 3itm
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3itm calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3itm
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
8 tunnels,
coloured by tunnel radius |
|
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
1.41 |
43.6 |
0.03 |
-0.12 |
4.8 |
83 |
|
0 |
1 |
7 |
6 |
3 |
0 |
0 |
|
|
 |
|
2 |
 |
1.20 |
1.36 |
50.6 |
0.26 |
-0.11 |
3.6 |
84 |
1 |
1 |
7 |
7 |
3 |
0 |
0 |
|
|
3 |
 |
1.19 |
1.34 |
70.8 |
-0.79 |
-0.17 |
15.2 |
84 |
6 |
3 |
8 |
10 |
3 |
0 |
0 |
|
|
4 |
 |
1.26 |
1.47 |
86.3 |
-0.83 |
-0.14 |
15.6 |
82 |
9 |
3 |
7 |
10 |
3 |
0 |
0 |
|
|
5 |
 |
1.21 |
1.71 |
20.8 |
-1.65 |
-0.66 |
17.9 |
94 |
3 |
1 |
3 |
1 |
0 |
1 |
0 |
|
|
6 |
 |
1.29 |
1.29 |
16.9 |
-1.97 |
-0.43 |
23.2 |
87 |
4 |
1 |
3 |
1 |
1 |
1 |
0 |
|
|
7 |
 |
1.43 |
1.60 |
17.0 |
-2.03 |
-0.64 |
21.9 |
94 |
3 |
1 |
3 |
1 |
0 |
1 |
0 |
|
 |
8 |
 |
1.42 |
1.60 |
18.4 |
-1.84 |
-0.59 |
21.6 |
93 |
4 |
1 |
3 |
1 |
0 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program