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PDBsum entry 3irj

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Ligand/metal interactions PDB id
3irj
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS

Ligands
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS-
SGN-IDS-SGN-IDS
SGN 1(A) to IDS 24(A)
  
Ligand SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS

SGN - N,O6-Disulfo-Glucosamine Formula: C6H13NO11S2
IDS - 2-O-Sulfo-Alpha-L-Idopyranuronic acid [O2-Sulfo-Glucuronic acid] Formula: C6H10O10S
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
SGN 1(A) 20 20 1 0 0 0 0 0 0 0
IDS 2(A) 17 17 1 0 0 0 0 0 0 0
SGN 3(A) 20 20 1 0 0 0 0 0 0 0
IDS 4(A) 17 17 1 0 0 0 0 0 0 0
SGN 5(A) 20 20 1 0 0 0 0 0 0 0
IDS 6(A) 17 17 1 0 0 0 0 0 0 0
SGN 7(A) 20 20 1 0 0 0 0 0 0 0
IDS 8(A) 17 17 1 0 0 0 0 0 0 0
SGN 9(A) 20 20 1 0 0 0 0 0 0 0
IDS 10(A) 17 17 1 0 0 0 0 0 0 0
SGN 11(A) 20 20 1 0 0 0 0 0 0 0
IDS 12(A) 17 17 1 0 0 0 0 0 0 0
SGN 13(A) 20 20 1 0 0 0 0 0 0 0
IDS 14(A) 17 17 1 0 0 0 0 0 0 0
SGN 15(A) 20 20 1 0 0 0 0 0 0 0
IDS 16(A) 17 17 1 0 0 0 0 0 0 0
SGN 17(A) 20 20 1 0 0 0 0 0 0 0
IDS 18(A) 17 17 1 0 0 0 0 0 0 0
SGN 19(A) 20 20 1 0 0 0 0 0 0 0
IDS 20(A) 17 17 1 0 0 0 0 0 0 0
SGN 21(A) 20 20 1 0 0 0 0 0 0 0
IDS 22(A) 17 17 1 0 0 0 0 0 0 0
SGN 23(A) 20 20 1 0 0 0 0 0 0 0
IDS 24(A) 17 16 0 0 1 0 - - - -
Advanced Analysis
Residue Name Mismatches Count
SGN 1(A) - 0
IDS 2(A) - 0
SGN 3(A) - 0
IDS 4(A) - 0
SGN 5(A) - 0
IDS 6(A) - 0
SGN 7(A) - 0
IDS 8(A) - 0
SGN 9(A) - 0
IDS 10(A) - 0
SGN 11(A) - 0
IDS 12(A) - 0
SGN 13(A) - 0
IDS 14(A) - 0
SGN 15(A) - 0
IDS 16(A) - 0
SGN 17(A) - 0
IDS 18(A) O2S: O1S|O3S: O2S|O1S: O3S 3
SGN 19(A) - 0
IDS 20(A) - 0
SGN 21(A) - 0
IDS 22(A) - 0
SGN 23(A) - 0
IDS 24(A) - 0
Additional Information
 

LIGPLOT of interactions involving ligand


Jmol


 

SGN 1(A) to IDS 24(A)

  
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