 |
PDBsum entry 3in5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3in5 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3in5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.27 |
1.27 |
28.0 |
-1.83 |
-0.78 |
18.6 |
97 |
|
3 |
1 |
4 |
0 |
0 |
0 |
0 |
|
DG 4 Q DG 5 Q DA 6 Q DA 7 Q DG 8 Q DG 9 Q DA 7 U
DC 11 U
|
 |
|
2 |
 |
1.27 |
1.27 |
31.6 |
-1.80 |
-0.54 |
24.4 |
87 |
4 |
2 |
2 |
1 |
0 |
0 |
0 |
DG 9 Q DA 10 Q DC 11 Q DA 7 U DG 8 U
|
|
3 |
 |
1.27 |
1.27 |
43.3 |
-1.75 |
-0.45 |
25.4 |
88 |
4 |
2 |
3 |
2 |
1 |
0 |
0 |
DG 9 Q DA 10 Q DC 11 Q DT 12 Q DA 4 U 8OG 5 U DG
6 U DA 7 U DG 8 U
|
 |
4 |
 |
1.26 |
1.26 |
46.4 |
-2.31 |
-0.54 |
32.6 |
82 |
9 |
3 |
2 |
2 |
1 |
0 |
0 |
DG 9 Q DA 10 Q DC 11 Q DT 12 Q 8OG 5 U DG 6 U DA
7 U DG 8 U
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program