PDBsum entry 3ibj Go to PDB code:  Tunnel analysis for: 3ibj calculated with MOLE 2.0 PDB id 3ibj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.76 26.3 1.44 0.43 6.6 67 0 2 1 7 1 1 2   2 1.18 1.76 27.2 2.39 0.74 2.8 66 0 2 1 8 1 0 3   3 1.20 1.76 28.3 1.62 0.49 6.2 66 0 2 1 8 1 1 2   4 1.18 1.76 29.2 2.30 0.71 2.7 65 0 2 1 9 1 0 3   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.