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PDBsum entry 3i8v

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protein ligands metals Protein-protein interface(s) links
Hydrolase PDB id
3i8v

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
335 a.a. *
Ligands
0MO ×2
GOL ×3
Metals
_CO
_ZN ×2
_MG ×2
Waters ×349
* Residue conservation analysis
PDB id:
3i8v
Name: Hydrolase
Title: Crystal structure of human pde4a with 4-(3-butoxy-4-methoxyphenyl) methyl-2-imidazolidone
Structure: Camp-specific 3',5'-cyclic phosphodiesterase 4a. Chain: a, b. Fragment: catalytic domain. Synonym: dpde2, pde46. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pde4a, dpde2. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.25Å     R-factor:   0.189     R-free:   0.222
Authors: R.K.Y.Cheng,L.Crawley,J.Barker,M.Wood,B.Felicetti,M.Whittaker
Key ref: R.K.Y.Cheng et al. Crystal structure of human pde4a with 4-(3-Butoxy-4-Methoxyphenyl)methyl-2-Imidazolidone. To be published, .
Date:
10-Jul-09     Release date:   21-Jul-09    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P27815  (PDE4A_HUMAN) -  3',5'-cyclic-AMP phosphodiesterase 4A from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
886 a.a.
335 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.3.1.4.53  - 3',5'-cyclic-AMP phosphodiesterase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: 3',5'-cyclic AMP + H2O = AMP + H+
3',5'-cyclic AMP
+ H2O
= AMP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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