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PDBsum entry 3i4m

Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) links
Protein chain B PDB id
3i4m
Protein chain B highlighted
(click to view)
 
Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
15 sheets
15 beta hairpins
1 psi loop
8 beta bulges
42 strands
38 helices
57 helix-helix interacs
132 beta turns
36 gamma turns
Chain 1429 a.a.
Chain 1125 a.a.
Chain 270 a.a.
Chain 187 a.a.
Chain 214 a.a.
Chain 88 a.a.
Chain 171 a.a.
Chain 137 a.a.
Chain 116 a.a.
Chain 65 a.a.
Chain 116 a.a.
Chain 47 a.a.
  
Chain (1125 residues)

UniProt code: P08518 (RPB2_YEAST)   [Pfam]

structural classification (7 domains) :
Domain Links CATH no.   Class Architecture
1 Unassigned = - -
2 Unassigned = - -
3 Unassigned = - -
4 3.90.1110.10 = Alpha Beta Alpha-Beta Complex
5 Unassigned = - -
6 2.40.270.10 = Mainly Beta Beta Barrel
7 2.40.50.150 = Mainly Beta Beta Barrel

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
Residue contacts:   
    to DNA/RNA     to metal
PDB SITE records:   
 AC1  AC2  AC3  AC4  AC5
 AC6  AC7  AC8  AC9

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


Domain 3
Topology diagram


Hera


Domain 4
Topology diagram


Hera


Domain 5
Topology diagram


Hera


Domain 6
Topology diagram


Hera


Domain 7
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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