PDBsum entry 3hs6

Tunnel analysis for: 3hs6 calculated with

MOLE 2.0

PDB id

3hs6

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.65

1.65

37.1

0.08

-0.04

6.4

72

2

1

2

5

6

0

0

EPA 1 A EDO 620 A

2

1.29

1.68

41.1

0.64

0.08

4.5

77

3

0

5

7

4

1

0

NAG 1 F

3

1.54

2.66

43.0

1.45

0.72

3.2

71

1

0

1

11

8

1

0

EPA 1 A

4

1.65

1.65

46.4

0.19

0.25

9.5

73

3

1

3

9

8

1

0

EPA 1 A

5

1.30

1.68

49.2

0.04

-0.09

7.2

76

3

1

4

6

4

1

0

6

1.18

1.39

51.7

-0.59

-0.15

11.1

80

4

4

2

7

5

2

0

7

1.20

1.39

52.9

-0.37

-0.07

9.9

80

3

3

4

7

5

1

2

8

1.39

1.60

19.7

-0.74

-0.18

11.8

76

2

1

1

3

1

1

0

EDO 4 A EDO 5 A

9

1.35

1.56

25.6

1.47

0.45

3.3

80

0

1

3

3

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.